PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G076400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 338aa    MW: 34628.5 Da    PI: 5.1905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G076400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.2e-12152197555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Brast04G076400.1.p 152 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 197
                         99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.06E-13145201No hitNo description
SuperFamilySSF474593.53E-17145207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16149206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9152197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MQPAGHGGGG QDDFLDQMLS ALPPAWAELA SAKPPWELPS AGGEDDESAL LASRLRHHQI  60
SGGGGGNDEL RLGELRSHGL DGGGGGFLPL PLFADRSRDD FVAAGMHGGA ASAAVHAPFG  120
QAGSMPAPPP PTAAAPPRQR VRARRGQATD PHSIAERLRR ERIAERMKAL QELVPNANKT  180
DKASMLDEII DYVKFLQVQV KVLSMSRLGG AAAVAPLVAN MSSEDNGNGD GTSSSGWDGN  240
GGNSDDDGGG NTLRATEEQV ARLMEEDMGA AMQYLQGKGL CLMPISLASL ISSATSPSPL  300
LPHRMGRATA GGGGVLHADG SPESPRSLVN GSTGGDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161RLRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570296.10.0PREDICTED: transcription factor bHLH82-like
SwissprotQ9ZUG93e-72BH066_ARATH; Transcription factor bHLH66
TrEMBLI1IDG00.0I1IDG0_BRADI; Uncharacterized protein
STRINGBRADI3G54070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.18e-37LJRHL1-like 3